Publications

Manipulating PTPRD function with ectodomain antibodies

Genes and Development · September 2023

Zhe Qian, Dongyan Song, Jonathan J. Ipsaro, Carmelita Bautista, Leemor Joshua-Tor, Johannes T.-H. Yeh, Nicholas K. Tonks

ETV6 dependency in Ewing sarcoma by antagonism of EWS-FLI1-mediated enhancer activation

Nature Cell Biology · January 2023

Yuan Gao, Xue-Yan He, Xiaoli S. Wu, Yu-Han Huang, Shushan Toneyan, Taehoon Ha, Jonathan J. Ipsaro, Peter K. Koo, Leemor Joshua-Tor, Kelly M. Bailey, Mikala Egeblad, Christopher R. Vakoc

OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage

Nature · May 2022

Xiaoli S. Wu, Xue-Yan He, Jonathan J. Ipsaro, Yu-Han Huang, Jonathan B. Preall, David Ng, Yan Ting Shue, Julien Sage, Mikala Egeblad, Leemor Joshua-Tor, Christopher R. Vakoc

Developmental roles and molecular mechanisms of Asterix/GTSF1

WIREs RNA · February 2022

Jonathan J. Ipsaro, Leemor Joshua-Tor

Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons

Cell Reports · March 2021

Jonathan J. Ipsaro, Paul A. O’Brien, Shibani Bhattacharya, Arthur G. Palmer III, Leemor Joshua-Tor

Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides

Journal of Proteome Research · April 2020

John P. Wilson*, Jonathan J. Ipsaro*, Samantha N. Del Giudice, Nikita Saha Turna, Carla M. Gauss, Katharine H. Dusenbury, Krisann Marquart, Keith D. Rivera, Darryl J. Pappin

Decoding the 5' nucleotide bias of PIWI-interacting RNAs

Nature Communications · February 2019

Chad B. Stein, Pavol Genzor, Sanga Mitra, Alexandra R. Elchert, Jonathan J. Ipsaro, Leif Benner, Sushil Sobti, Yijun Su, Molly Hammell, Leemor Joshua-Tor, Astrid D. Haase

Proteases for the production of N-terminal argininyl-and lysinyl-peptides and methods of use in protein analysis

US Patent · August 2017

Darryl J. Pappin, John P. Wilson, Jonathan J. Ipsaro

Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis

PLoS One · February 2017

Jonathan J. Ipsaro, Chen Shen, Eri Arai, Yali Xu, Justin B. Kinney, Leemor Joshua-Tor, Christopher R. Vakoc, Junwei Shi

NSD3-Short Is an Adaptor Protein that Couples BRD4 to the CHD8 Chromatin Remodeler

Molecular Cell · December 2015

Chen Shen, Jonathan J. Ipsaro, Junwei Shi, Joseph P. Milazzo, Eric Wang, Jae-Seok Roe, Yutaka Suzuki, Darryl J. Pappin, Leemor Joshua-Tor, Christopher R. Vakoc

From guide to target: molecular insights into eukaryotic RNA-interference machinery

Nature Structural & Molecular Biology · January 2015

Jonathan J. Ipsaro, Leemor Joshua-Tor

The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis

Nature · November 2012

Jonathan J. Ipsaro*, Astrid D. Haase*, Simon R. Knott, Leemor Joshua-Tor, Gregory J. Hannon

Structurally similar but functionally diverse ZU5 domains in human erythrocyte ankyrin

Journal of Molecular Biology · April 2012

Mai Yasunaga, Jonathan J. Ipsaro, Alfonso Mondragón

Reporter protein-targeted probes for magnetic resonance imaging

Journal of the American Chemical Society · October 2011

Renee C. Strauch, Daniel J. Mastarone, Preeti A. Sukerkar, Ying Song, Jonathan J. Ipsaro, Thomas J. Meade

Crystal structure and functional interpretation of the erythrocyte spectrin tetramerization domain complex

Blood · June 2010

Jonathan J. Ipsaro, Sandra L. Harper, Troy E. Messick, Ronen Marmorstein, Alfonso Mondragón, David W. Speicher

Structural basis for spectrin recognition by ankyrin

Blood · May 2010

Jonathan J. Ipsaro, Alfonso Mondragón

Structures of the spectrin-ankyrin interaction binding domains

Blood · May 2009

Jonathan J. Ipsaro, Lei Huang, Alfonso Mondragón

Molecular epitopes of the ankyrin-spectrin interaction

Biochemistry · July 2008

Jonathan J. Ipsaro*, Lei Huang*, Lucy Gutierrez, Ruby I. MacDonald

A draft of protein interactions in the malaria parasite P. falciparum

Journal of Proteome Research · April 2007

Stefan Wuchty, Jonathan J. Ipsaro